257D: Base Pair Morphology Parameters

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As of 3-Aug-2022 number of released structures: 12227

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NDB ID: ADF073 PDB ID: 257D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_DC2:DG11_B	0.096	-0.254	0.135	6.596	-13.242	-2.799
1	3	A_DC3:DG10_B	0.851	-0.133	0.406	6.129	-20.695	4.544
1	6	A_DC6:DG7_B	0.619	-0.307	-0.078	3.681	0.982	-4.863
1	1	A_DG1:DC12_B	-0.619	0.077	-0.112	-3.741	1.402	3.415
1	4	A_DG4:DC9_B	-0.141	0.048	-0.366	-7.434	-10.612	6.22
1	5	A_DG5:DC8_B	-0.522	-0.034	-0.128	-10.474	-12.508	4.743

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.