A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
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NDB ID: 7EDT  PDB ID: 7EDT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110A_5BU10:A15_B-0.107-0.1410.002-3.377-11.9380.025
13A_A3:5BU22_B0.089-0.13-0.033-0.255-12.9591.348
14A_C4:G21_B0.3-0.1220.15-0.014-15.3212.239
16A_C6:C19_B5.077-2.3530.81720.72228.139-82.001
17A_C7:C18_B-6.403-4.959-0.82216.145-28.447-40.224
111A_C11:G14_B0.279-0.166-0.0231.749-8.733-1.043
112A_C12:G13_B0.21-0.1110.0393.312-10.201-0.188
11A_G1:C24_B-0.143-0.0590.116-8.441-9.7480.582
12A_G2:C23_B-0.265-0.130.134-4.14-8.6110.039
18A_G8:U17_B-2.393-0.619-0.229-6.144-12.651.263
19A_G9:C16_B-0.256-0.124-0.047-9.768-9.0311.117
15A_U5:G20_B2.488-0.5740.013-8.647-12.587-2.27

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.